/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#include "spectrumlcmsmscollection.h"

namespace bol {

  SpectrumLcmsmsCollection::SpectrumLcmsmsCollection()
  : vector<SpectrumLcmsms*>()
  {
    m_index=NULL;
  }


  SpectrumLcmsmsCollection::~SpectrumLcmsmsCollection()
  {
  }

  void SpectrumLcmsmsCollection::buildIndex(){
    m_index=new MassIndex<SpectrumLcmsmsMassIndexAnchor, vector<const SpectrumLcmsmsMassIndexAnchor*>::const_iterator>(10000);
    for(vector<SpectrumLcmsms*>::iterator it=begin(); it<end();it++){
      ///@if we want to have multiple precursor, check here tooo
      double moz=(*it)->moz();
      for(unsigned int *c=(*it)->charges(); *c; c++){
        index()->addAnchor(new SpectrumLcmsmsMassIndexAnchor(MassCalculator::charged2deconvol(moz, *c), *it, *c));
      }
    }
    index()->buildIndex();
  }

}
